Module rust_htslib::htslib [] [src]

Modules

vcf
vcfutils

Structs

Struct_Unnamed1
Struct_Unnamed10
Struct_Unnamed2
Struct_Unnamed4
Struct_Unnamed5
Struct_Unnamed6
Struct_Unnamed7
Struct_Unnamed8
Struct_Unnamed9
Struct___kstring_t
Struct_htsFormat
Union_Unnamed3

Enums

Struct_BGZF
Struct___bam_mplp_t
Struct___bam_plp_t
Struct___hts_idx_t
Struct_cram_fd
Struct_hFILE

Constants

CRAM_OPT_DECODE_MD
CRAM_OPT_EMBED_REF
CRAM_OPT_IGNORE_MD5
CRAM_OPT_MULTI_SEQ_PER_SLICE
CRAM_OPT_NO_REF
CRAM_OPT_NTHREADS
CRAM_OPT_PREFIX
CRAM_OPT_RANGE
CRAM_OPT_REFERENCE
CRAM_OPT_REQUIRED_FIELDS
CRAM_OPT_SEQS_PER_SLICE
CRAM_OPT_SHARED_REF
CRAM_OPT_SLICES_PER_CONTAINER
CRAM_OPT_THREAD_POOL
CRAM_OPT_USE_BZIP2
CRAM_OPT_USE_LZMA
CRAM_OPT_USE_RANS
CRAM_OPT_VERBOSITY
CRAM_OPT_VERSION
HTS_FMT_BAI
SAM_AUX
SAM_CIGAR
SAM_FLAG
SAM_MAPQ
SAM_PNEXT
SAM_POS
SAM_QNAME
SAM_QUAL
SAM_RGAUX
SAM_RNAME
SAM_RNEXT
SAM_SEQ
SAM_TLEN
bai
bam
bcf
bed
bgzf
binary_format
category_maximum
compression_maximum
crai
cram
csi
custom
format_maximum
gzi
gzip
index_file
no_compression
region_list
sam
sequence_data
tbi
text_format
unknown_category
unknown_format
variant_data
vcf

Statics

hts_verbose
seq_nt16_int
seq_nt16_str
seq_nt16_table

Functions

bam_aux2A
bam_aux2Z
bam_aux2f
bam_aux2i
bam_aux_append
bam_aux_del
bam_aux_get
bam_cigar2qlen
bam_cigar2rlen
bam_copy1
bam_destroy1
bam_dup1
bam_endpos
bam_flag2str
bam_hdr_destroy
bam_hdr_dup
bam_hdr_init
bam_hdr_read
bam_hdr_write
bam_index_build
bam_init1
bam_mplp_auto
bam_mplp_destroy
bam_mplp_init
bam_mplp_init_overlaps
bam_mplp_set_maxcnt
bam_name2id
bam_plp_auto
bam_plp_destroy
bam_plp_init
bam_plp_next
bam_plp_push
bam_plp_reset
bam_plp_set_maxcnt
bam_read1
bam_str2flag
bam_write1
bgzf_close
bgzf_open
hts_close
hts_detect_format
hts_file_type
hts_format_description
hts_get_format
hts_getline
hts_hopen
hts_idx_destroy
hts_idx_finish
hts_idx_get_meta
hts_idx_get_n_no_coor
hts_idx_get_stat
hts_idx_init
hts_idx_load
hts_idx_push
hts_idx_save
hts_idx_seqnames
hts_idx_set_meta
hts_itr_destroy
hts_itr_next
hts_itr_query
hts_itr_querys
hts_open
hts_parse_reg
hts_readlines
hts_readlist
hts_set_fai_filename
hts_set_opt
hts_set_threads
hts_version
sam_format1
sam_hdr_parse
sam_hdr_read
sam_hdr_write
sam_index_load
sam_itr_queryi
sam_itr_querys
sam_open_mode
sam_parse1
sam_read1
sam_write1

Type Definitions

BGZF
Enum_cram_option
Enum_htsCompression
Enum_htsExactFormat
Enum_htsFormatCategory
Enum_sam_fields
bam1_core_t
bam1_t
bam_hdr_t
bam_mplp_t
bam_pileup1_t
bam_plp_auto_f
bam_plp_t
htsFile
htsFormat
hts_id2name_f
hts_idx_t
hts_itr_query_func
hts_itr_t
hts_name2id_f
hts_pair64_t
hts_readrec_func
int16_t
int32_t
int64_t
int8_t
int_fast16_t
int_fast32_t
int_fast64_t
int_fast8_t
int_least16_t
int_least32_t
int_least64_t
int_least8_t
intmax_t
intptr_t
kstring_t
ptrdiff_t
samFile
size_t
uint16_t
uint32_t
uint64_t
uint8_t
uint_fast16_t
uint_fast32_t
uint_fast64_t
uint_fast8_t
uint_least16_t
uint_least32_t
uint_least64_t
uint_least8_t
uintmax_t
uintptr_t
wchar_t