#!/bin/bash
set -e
INPUT=testdata/four_reads.pe.fastq;
./target/debug/friends_gunther --paired-end < $INPUT
if [ $? -gt 0 ]; then
echo "Test failed for validating a good set of reads"
exit 1
fi
set +e
head -n 15 $INPUT | ./target/debug/friends_gunther --paired-end --verbose 2>/dev/null
if [ $? -eq 0 ]; then
echo "Test failed for marking a bad set of reads"
exit 1
fi
set -e
echo "$0 passed!"