Module rna_ss_params::utils

Structs

BufWriter	Wraps a writer and buffers its output.
File	A reference to an open file on the filesystem.
HashMap	A hash map implemented with quadratic probing and SIMD lookup.
Path	A slice of a path (akin to str).
SPECIAL_HL_DELTA_FES
SaScoringParams

Constants

A
AA
AC
AG
AU
C
CA
CC
CG
COEFFICIENT_4_LOG_EXTRAPOLATION_OF_INIT_HL_DELTA_FE
COEFFICIENT_4_NINIO
COEFFICIENT_4_TERM_OF_NUM_OF_BRANCHING_HELICES_ON_INIT_ML_DELTA_FE
CONST_4_INIT_ML_DELTA_FE
CONTRA_BL_0X1_FES
CONTRA_EL_PAIRED_FE
CONTRA_EL_UNPAIRED_FE
CONTRA_IL_1X1_FES
CONTRA_IL_EXPLICIT_FES
CONTRA_MAX_LOOP_LEN
CONTRA_ML_BASE_FE
CONTRA_ML_PAIRED_FE
CONTRA_ML_UNPAIRED_FE
CU
G
GA
GAS_CONST
GC
GG
GU
HELIX_AU_OR_GU_END_PENALTY_DELTA_FE
INVERSE_TEMPERATURE
K0
KILO
MAX_2_LOOP_LEN
MAX_LOOP_LEN_4_LOG_EXTRAPOLATION_OF_INIT_LOOP_DELTA_FE
MAX_NINIO
MIN_HL_LEN
MIN_LOOP_LEN_4_LOG_EXTRAPOLATION_OF_INIT_HL_DELTA_FE
MIN_SPAN_OF_INDEX_PAIR_CLOSING_HL
NEG_INF
NEG_INFINITY	Negative infinity (−∞). Use f32::NEG_INFINITY instead.
NUM_OF_BASES
NUM_OF_SPECIAL_HLS
NUM_OF_TRANSITS
TEMPERATURE
U
UA
UC
UG
UU

Traits

BufRead	A BufRead is a type of Reader which has an internal buffer, allowing it to perform extra ways of reading.
Read	The Read trait allows for reading bytes from a source.
Seek	The Seek trait provides a cursor which can be moved within a stream of bytes.
Write	A trait for objects which are byte-oriented sinks.

Functions

scale

Type Definitions

Base
BasePair
CaScoreMat
Char
CharPair
ContraBasePairFes
ContraBl0x1Fes
ContraBlLengthFes
ContraDangleFes
ContraHelixClosingFes
ContraHlLengthFes
ContraIl1x1Fes
ContraIlAsymmLengthFes
ContraIlExplicitFes
ContraIlLengthFes
ContraIlSymmLengthFes
ContraStackFes
ContraTerminalMismatchFes
DeDeltaFes
FreeEnergy
HlTmDeltaFes
IlTmBonusDeltaFes
IlTmDeltaFes
InitBlDeltaFes
InitHlDeltaFes
InitIlDeltaFes
LogProb
MlTmDeltaFes
OneVs1IlDeltaFes
OneVs2Il
OneVs2IlDeltaFes
PartFunc
PartFuncMat
PartFuncs
Pos
PosPair
Prob
ProbMat
ProbSeqPair
Probs
SaScore
ScaleParam
ScaleParamMat
ScaleParams
Seq
Seq
SeqSlice
SpecialHlDeltaFes
SsPair
StackDeltaFes
TwoVs2Il
TwoVs2IlDeltaFes