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#![doc(html_root_url = "https://docs.rs/ring_api/0.1.0")]
#![deny(missing_debug_implementations, missing_copy_implementations,
trivial_casts, trivial_numeric_casts,
unsafe_code,
unstable_features,
anonymous_parameters, bare_trait_objects,
variant_size_differences,
unused_import_braces, unused_qualifications, missing_docs)]
#![allow(clippy::single_match, clippy::match_same_arms, clippy::match_ref_pats,
clippy::clone_on_ref_ptr, clippy::needless_pass_by_value)]
#![deny(clippy::wrong_pub_self_convention, clippy::used_underscore_binding,
clippy::similar_names, clippy::pub_enum_variant_names,
clippy::missing_docs_in_private_items,
clippy::non_ascii_literal, clippy::unicode_not_nfc,
clippy::result_unwrap_used, clippy::option_unwrap_used,
clippy::option_map_unwrap_or_else, clippy::option_map_unwrap_or,
clippy::filter_map,
clippy::shadow_unrelated, clippy::shadow_reuse, clippy::shadow_same,
clippy::int_plus_one, clippy::string_add_assign, clippy::if_not_else,
clippy::invalid_upcast_comparisons,
clippy::cast_precision_loss, clippy::cast_lossless,
clippy::cast_possible_wrap, clippy::cast_possible_truncation,
clippy::mutex_integer, clippy::mut_mut, clippy::items_after_statements,
clippy::print_stdout, clippy::mem_forget, clippy::maybe_infinite_iter)]
#[macro_use]
extern crate serde_derive;
extern crate serde;
extern crate serde_json;
extern crate reqwest;
pub use client::*;
pub use error::*;
pub use requests::*;
pub use settings::*;
pub use job::*;
pub mod client;
pub mod error;
pub mod requests;
pub mod settings;
pub mod job;
pub mod multipart;
#[cfg(test)]
#[allow(clippy::print_stdout)]
mod tests {
use super::*;
#[test]
fn submit_id() -> Result<()> {
use std::{
thread::sleep,
time::Duration,
};
let client = Client::new();
let request = SubmitId {
pdb_id: String::from("3S6A"),
settings: Settings {
chain: Chain::Id('A'),
network_policy: NetworkPolicy::CAlpha,
interactions: InteractionType::All,
..Default::default()
},
};
let response = client.send(&request)?;
println!("{:#?}", response);
loop {
let request = Status {
job_id: response.job_id.clone(),
};
let response = client.send(&request)?;
println!("{:#?}", response);
match response.status {
JobStatus::Complete => break Ok(()),
JobStatus::Failed => panic!("job failed"),
JobStatus::InProgress | JobStatus::Partial => {}
}
sleep(Duration::from_secs(5));
}
}
#[test]
pub fn submit_structure() -> Result<()> {
use std::{
thread::sleep,
time::Duration,
};
let client = Client::new();
let request = SubmitStructure::with_pdb_file("testdata/3s6a.pdb")?;
let response = client.send(&request)?;
println!("{:#?}", response);
loop {
let request = Status {
job_id: response.job_id.clone(),
};
let response = client.send(&request)?;
println!("{:#?}", response);
match response.status {
JobStatus::Complete => break Ok(()),
JobStatus::Failed => panic!("job failed"),
JobStatus::InProgress | JobStatus::Partial => {}
}
sleep(Duration::from_secs(5));
}
}
#[test]
fn serde() -> std::result::Result<(), Box<dyn std::error::Error>> {
let s1 = Settings {
chain: Chain::Id('X'),
network_policy: NetworkPolicy::CBeta,
interactions: InteractionType::NoSpecific,
sequence_separation: 42,
thresholds: Thresholds::relaxed(),
skip_hetero: true,
skip_water: false,
perform_msa: true,
..Default::default()
};
let json = serde_json::to_string_pretty(&s1)?;
let s2: Settings = serde_json::from_str(&json)?;
assert_eq!(s1, s2);
let json_default = serde_json::to_string(&Settings::default())?;
let s_default: Settings = serde_json::from_str(&json_default)?;
assert_eq!(s_default, Settings::default());
Ok(())
}
#[test]
fn retrieve_result() -> Result<()> {
let client = Client::new();
let job_id = JobId::from("5cefd030b265bd294b0f6b2c");
let request = RetrieveResult { job_id };
let response = client.send(&request)?;
println!("{:#?}", response.nodes[0]);
println!("{:#?}", response.edges[2]);
println!("{}", response.edges[2].node_id_1);
println!("{}", response.edges[2].interaction);
Ok(())
}
}