initSidebarItems({"enum":[["MatrixType","Denotes the type of the substitution matrix. Use Identity for simple edit-distance calculations."]],"fn":[["global_alignment_score","Provides a score for global pairwise alignment, using a vectorized version of Needleman-Wunsch."],["local_alignment_score","Returns a score for local pairwise alignment using a vectorized version of Smith-Waterman."],["semi_global_alignment_score","Provides a score for semi-global pairwise alignment using a vectorized algorithm."],["semi_global_alignment_stats","Provides statistics for semi-global pairwise alignment using a vectorized algorithm."]],"struct":[["AlignmentStats","Stores statistics from an alignment."],["Matrix","A substitution matrix to use when aligning DNA or protein. Can be reused in many profiles."],["Profile","A container for a parasail query profile. Can be reused to re-align the same sequence against multiple references."]]});