Crate light_phylogeny[−][src]

light_phylogeny

light_phylogeny is a set of methods and functions dedicated to phylogeny.

ArenaTree	Structure ArenaTree.
Config	Structure Config: drawing config.
Noeud	Structure Noeud.
Options	Structure Options: drawing options.

enum of the possible events in a gene tree

add_child	Add a node to another node
check_is_rooted	Check if tree in newick format is rooted
draw_sptree_gntrees	Draw a svg pipe species tree and several gene trees inside it
draw_tree	Draw a svg simple tree
get_gtransfer
lca	Send the index of the last common ancestor of 2 nodes
map_parasite_g2s
map_parasite_s2g
map_transfer
move_child	Move a node from a parent node to another node
newick2tree	Fill an ArenaTree structure with the contents of a parentheses tree.
phyloxml_processing	Create a svg of the tree in phyloxml context
read_newick	Read a newick file and store the tree into ArenaTree structure
read_phyloxml	Read a phyloxml file and store the tree into a ArenaTree structure
read_recphyloxml	Read a recphyloxml file and store the species and gene trees into several ArenaTree structures
real_length	Transforms the tree into real branch length representation
recphyloxml_processing	Create a svg of the tree in recphyloxml context
reset_pos	Reset all positions x y xmod ymod of the tree
summary	Display a short summary of each node of the tree