gpu-sw 1.0.1

GPU-SW, GPGPU-enabled SW algorithm
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GPU-SW, GPGPU-enabled SW algorithm

This library provides the GPU-SW algorithm, a GPGPU-enabled classical pairwise alignment one.

Dependencies

The dependency in this project is Arrayfire (for the GPGPU computation). ArrayFire could be thought as a wrapper of CUDA, OpenCL, and CPU multithreading, providing a unified programming interface and releasing us to optimize for each GPU. Although ArrayFire doesn't need to write kernel code, the GPGPU speed achieves to/is faster rather than one obtained by writing native kernel code.

Author

Heartsh

License

Copyright (c) 2017 Heartsh
Licensed under the MIT license.