Module gfa::gfa

Structs

Containment
GFA	This module defines the various GFA line types, the GFA object, and some utility functions and types. Simple representation of a parsed GFA file, using a Vec to store each separate GFA line type.
Header	The header line of a GFA graph
Link
Path	The step list that the path actually consists of is an unparsed BString to keep memory down; use path.iter() to get an iterator over the parsed path segments and orientations.
Segment	A segment in a GFA graph. Generic over the name type, but currently the parser is only defined for N = BString

Enums

Line	Enum containing the different kinds of GFA lines.
Orientation	Represents segment orientation/strand

Functions

gfa_into_iter

Consume a GFA object to produce an iterator over all the lines contained within. The iterator first produces all segments, then links, then containments, and finally paths.