CapR, Efficient RNA Context Probability Estimator

This binary provides the CapR algorithm originated by Tsukasa Fukunaga, an efficient RNA conxtext probability estimator. It provides the multi-threaded CapR while the original binary provides the serial one. You can check all the available options by adding a option, "-h".

Installation

This project has been written by Rust, a system programming language. So first you need to install a Rust compiler (Rustc), Rust package manager (Cargo) and Rust standard library. Please visit a Rust homepage to see more about Rust. You can install Rustc, Cargo and the Rust standard library with one line as follows:

$ curl https://sh.rustup.rs -sSf | sh -s -- --default-toolchain nightly

The above installation is done by Rustup, so you can easily switch a compiler to use. The nightly compiler enbles to test and benchmark on Rust. If you don't need them, switch to the stable one as follows:

$ rustup default stable

So you can install CapR as follows:

$ cargo install --git https://github.com/heartsh/cpr

Check if CapR has been installed properly as follows:

$ cpr

If you're interested in how much fast CapR is, run a benchmark as follows:

$ git clone https://github.com/heartsh/cpr && cd cpr
$ tar xvf asts.tar.gz && gunzip asts/*.gz
$ cargo test --release -- --nocapture

Author

Heartsh

License

Copyright (c) 2016 Heartsh
Licensed under the MIT license.