Build #844809 2023-06-24T02:19:59.290121+00:00
# rustc version
rustc 1.72.0-nightly (04075b320 2023-06-22)
# docs.rs version
docsrs 0.6.0 (4b18bfe6 2023-06-02)
# build log
[INFO] running `Command { std: "docker" "create" "-v" "/home/cratesfyi/workspace/builds/bio-1.3.1/target:/opt/rustwide/target:rw,Z" "-v" "/home/cratesfyi/workspace/builds/bio-1.3.1/source:/opt/rustwide/workdir:ro,Z" "-v" "/home/cratesfyi/workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/home/cratesfyi/workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "DOCS_RS=1" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "3221225472" "--cpus" "3" "--user" "1001:1001" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:19e73879b68f455e41552ea35293514db52ea292d993f571636dbffedb77a1ee" "/opt/rustwide/cargo-home/bin/cargo" "+nightly" "rustdoc" "--lib" "-Zrustdoc-map" "-Z" "unstable-options" "--config" "build.rustdocflags=[\"-Z\", \"unstable-options\", \"--emit=invocation-specific\", \"--resource-suffix\", \"-20230622-1.72.0-nightly-04075b320\", \"--static-root-path\", \"/-/rustdoc.static/\", \"--cap-lints\", \"warn\", \"--disable-per-crate-search\", \"--extern-html-root-takes-precedence\"]" "--offline" "-Zunstable-options" "--config=doc.extern-map.registries.crates-io=\"https://docs.rs/{pkg_name}/{version}/x86_64-unknown-linux-gnu\"" "-Zrustdoc-scrape-examples" "-j3" "--target" "x86_64-unknown-linux-gnu", kill_on_drop: false }`
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] [stdout] 3623921ec1020255746fa3a12a5dde9da8363f37d69f954f9ecec5db5bcb82b4
[INFO] running `Command { std: "docker" "start" "-a" "3623921ec1020255746fa3a12a5dde9da8363f37d69f954f9ecec5db5bcb82b4", kill_on_drop: false }`
[INFO] [stderr] warning: Target filter specified, but no targets matched. This is a no-op
[INFO] [stderr] Documenting bio v1.3.1 (/opt/rustwide/workdir)
[INFO] [stderr] warning: unclosed HTML tag `usize`
[INFO] [stderr] --> src/alignment/pairwise/banded.rs:326:51
[INFO] [stderr] |
[INFO] [stderr] 326 | /// the specified number of mismatches (Option<usize>)
[INFO] [stderr] | ^^^^^^^
[INFO] [stderr] |
[INFO] [stderr] = note: `#[warn(rustdoc::invalid_html_tags)]` on by default
[INFO] [stderr] help: try marking as source code
[INFO] [stderr] |
[INFO] [stderr] 326 | /// the specified number of mismatches (`Option<usize>`)
[INFO] [stderr] | + +
[INFO] [stderr]
[INFO] [stderr] warning: this URL is not a hyperlink
[INFO] [stderr] --> src/alignment/poa.rs:17:5
[INFO] [stderr] |
[INFO] [stderr] 17 | //! https://github.com/ljdursi/poapy
[INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ help: use an automatic link instead: `<https://github.com/ljdursi/poapy>`
[INFO] [stderr] |
[INFO] [stderr] = note: bare URLs are not automatically turned into clickable links
[INFO] [stderr] = note: `#[warn(rustdoc::bare_urls)]` on by default
[INFO] [stderr]
[INFO] [stderr] warning: this URL is not a hyperlink
[INFO] [stderr] --> src/alignment/sparse.rs:51:17
[INFO] [stderr] |
[INFO] [stderr] 51 | /// Paper here :https://arxiv.org/abs/1407.2407. Original implementation here:
[INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ help: use an automatic link instead: `<https://arxiv.org/abs/1407.2407.>`
[INFO] [stderr] |
[INFO] [stderr] = note: bare URLs are not automatically turned into clickable links
[INFO] [stderr]
[INFO] [stderr] warning: this URL is not a hyperlink
[INFO] [stderr] --> src/alignment/sparse.rs:52:5
[INFO] [stderr] |
[INFO] [stderr] 52 | /// https://github.com/fpavetic/lcskpp
[INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ help: use an automatic link instead: `<https://github.com/fpavetic/lcskpp>`
[INFO] [stderr] |
[INFO] [stderr] = note: bare URLs are not automatically turned into clickable links
[INFO] [stderr]
[INFO] [stderr] warning: this URL is not a hyperlink
[INFO] [stderr] --> src/data_structures/bit_tree.rs:8:35
[INFO] [stderr] |
[INFO] [stderr] 8 | //! Implementation outlined here: https://www.topcoder.com/community/data-science/data-science-tutorials/binary-indexed-trees/
[INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ help: use an automatic link instead: `<https://www.topcoder.com/community/data-science/data-science-tutorials/binary-indexed-trees/>`
[INFO] [stderr] |
[INFO] [stderr] = note: bare URLs are not automatically turned into clickable links
[INFO] [stderr]
[INFO] [stderr] warning: this URL is not a hyperlink
[INFO] [stderr] --> src/data_structures/interval_tree/array_backed_interval_tree.rs:4:5
[INFO] [stderr] |
[INFO] [stderr] 4 | //! https://github.com/lh3/cgranges / https://github.com/lh3/cgranges/blob/master/cpp/IITree.h
[INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ help: use an automatic link instead: `<https://github.com/lh3/cgranges>`
[INFO] [stderr] |
[INFO] [stderr] = note: bare URLs are not automatically turned into clickable links
[INFO] [stderr]
[INFO] [stderr] warning: this URL is not a hyperlink
[INFO] [stderr] --> src/data_structures/interval_tree/array_backed_interval_tree.rs:4:39
[INFO] [stderr] |
[INFO] [stderr] 4 | //! https://github.com/lh3/cgranges / https://github.com/lh3/cgranges/blob/master/cpp/IITree.h
[INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ help: use an automatic link instead: `<https://github.com/lh3/cgranges/blob/master/cpp/IITree.h>`
[INFO] [stderr] |
[INFO] [stderr] = note: bare URLs are not automatically turned into clickable links
[INFO] [stderr]
[INFO] [stderr] warning: this URL is not a hyperlink
[INFO] [stderr] --> src/data_structures/suffix_array.rs:223:5
[INFO] [stderr] |
[INFO] [stderr] 223 | /// http://ls11-www.cs.tu-dortmund.de/people/rahmann/algoseq.pdf
[INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ help: use an automatic link instead: `<http://ls11-www.cs.tu-dortmund.de/people/rahmann/algoseq.pdf>`
[INFO] [stderr] |
[INFO] [stderr] = note: bare URLs are not automatically turned into clickable links
[INFO] [stderr]
[INFO] [stderr] warning: this URL is not a hyperlink
[INFO] [stderr] --> src/io/bed.rs:121:6
[INFO] [stderr] |
[INFO] [stderr] 121 | /// (http://bedtools.readthedocs.org/en/latest/content/general-usage.html)
[INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ help: use an automatic link instead: `<http://bedtools.readthedocs.org/en/latest/content/general-usage.html>`
[INFO] [stderr] |
[INFO] [stderr] = note: bare URLs are not automatically turned into clickable links
[INFO] [stderr]
[INFO] [stderr] warning: this URL is not a hyperlink
[INFO] [stderr] --> src/pattern_matching/mod.rs:18:102
[INFO] [stderr] |
[INFO] [stderr] 18 | //! Another library that provides heavily optimized routines for string search primitives is memchr: https://crates.io/crates/memchr
[INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ help: use an automatic link instead: `<https://crates.io/crates/memchr>`
[INFO] [stderr] |
[INFO] [stderr] = note: bare URLs are not automatically turned into clickable links
[INFO] [stderr]
[INFO] [stderr] warning: this URL is not a hyperlink
[INFO] [stderr] --> src/pattern_matching/pssm/dnamotif.rs:31:9
[INFO] [stderr] |
[INFO] [stderr] 31 | /// https://github.com/rust-lang/rust/issues/42863
[INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ help: use an automatic link instead: `<https://github.com/rust-lang/rust/issues/42863>`
[INFO] [stderr] |
[INFO] [stderr] = note: bare URLs are not automatically turned into clickable links
[INFO] [stderr]
[INFO] [stderr] warning: this URL is not a hyperlink
[INFO] [stderr] --> src/pattern_matching/pssm/protmotif.rs:31:9
[INFO] [stderr] |
[INFO] [stderr] 31 | /// https://github.com/rust-lang/rust/issues/42863
[INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ help: use an automatic link instead: `<https://github.com/rust-lang/rust/issues/42863>`
[INFO] [stderr] |
[INFO] [stderr] = note: bare URLs are not automatically turned into clickable links
[INFO] [stderr]
[INFO] [stderr] warning: this URL is not a hyperlink
[INFO] [stderr] --> src/pattern_matching/pssm/mod.rs:231:11
[INFO] [stderr] |
[INFO] [stderr] 231 | /// https://www.ncbi.nlm.nih.gov/pmc/articles/PMC169193/
[INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ help: use an automatic link instead: `<https://www.ncbi.nlm.nih.gov/pmc/articles/PMC169193/>`
[INFO] [stderr] |
[INFO] [stderr] = note: bare URLs are not automatically turned into clickable links
[INFO] [stderr]
[INFO] [stderr] warning: this URL is not a hyperlink
[INFO] [stderr] --> src/pattern_matching/pssm/mod.rs:280:12
[INFO] [stderr] |
[INFO] [stderr] 280 | /// https://en.wikipedia.org/wiki/Sequence_logo#Logo_creation
[INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ help: use an automatic link instead: `<https://en.wikipedia.org/wiki/Sequence_logo#Logo_creation>`
[INFO] [stderr] |
[INFO] [stderr] = note: bare URLs are not automatically turned into clickable links
[INFO] [stderr]
[INFO] [stderr] warning: this URL is not a hyperlink
[INFO] [stderr] --> src/stats/pairhmm/mod.rs:3:45
[INFO] [stderr] |
[INFO] [stderr] 3 | //! Current Topics in Genome Analysis 2008. http://doi.org/10.1017/CBO9780511790492.
[INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ help: use an automatic link instead: `<http://doi.org/10.1017/CBO9780511790492.>`
[INFO] [stderr] |
[INFO] [stderr] = note: bare URLs are not automatically turned into clickable links
[INFO] [stderr]
[INFO] [stderr] warning: this URL is not a hyperlink
[INFO] [stderr] --> src/stats/pairhmm/homopolypairhmm.rs:215:45
[INFO] [stderr] |
[INFO] [stderr] 215 | /// Current Topics in Genome Analysis 2008. http://doi.org/10.1017/CBO9780511790492.
[INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ help: use an automatic link instead: `<http://doi.org/10.1017/CBO9780511790492.>`
[INFO] [stderr] |
[INFO] [stderr] = note: bare URLs are not automatically turned into clickable links
[INFO] [stderr]
[INFO] [stderr] warning: this URL is not a hyperlink
[INFO] [stderr] --> src/stats/pairhmm/pairhmm.rs:46:45
[INFO] [stderr] |
[INFO] [stderr] 46 | /// Current Topics in Genome Analysis 2008. http://doi.org/10.1017/CBO9780511790492.
[INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ help: use an automatic link instead: `<http://doi.org/10.1017/CBO9780511790492.>`
[INFO] [stderr] |
[INFO] [stderr] = note: bare URLs are not automatically turned into clickable links
[INFO] [stderr]
[INFO] [stderr] warning: this URL is not a hyperlink
[INFO] [stderr] --> src/utils/fastexp.rs:32:9
[INFO] [stderr] |
[INFO] [stderr] 32 | /// https://eldorado.tu-dortmund.de/bitstream/2003/36203/1/Dissertation_Kopczynski.pdf
[INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ help: use an automatic link instead: `<https://eldorado.tu-dortmund.de/bitstream/2003/36203/1/Dissertation_Kopczynski.pdf>`
[INFO] [stderr] |
[INFO] [stderr] = note: bare URLs are not automatically turned into clickable links
[INFO] [stderr]
[INFO] [stderr] warning: `bio` (lib doc) generated 18 warnings (run `cargo fix --lib -p bio` to apply 17 suggestions)
[INFO] [stderr] Finished dev [unoptimized + debuginfo] target(s) in 3.96s
[INFO] running `Command { std: "docker" "inspect" "3623921ec1020255746fa3a12a5dde9da8363f37d69f954f9ecec5db5bcb82b4", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "3623921ec1020255746fa3a12a5dde9da8363f37d69f954f9ecec5db5bcb82b4", kill_on_drop: false }`
[INFO] [stdout] 3623921ec1020255746fa3a12a5dde9da8363f37d69f954f9ecec5db5bcb82b4