Module bio::stats::logprobs
[−]
[src]
Handling log-probabilities.
Reexports
pub use stats::{Prob, LogProb}; |
Functions
| add |
Add the given probabilities in a numerically stable way (Durbin 1998). |
| cumsum |
Calculate the cumulative sum of the given probabilities in a numerically stable way (Durbin 1998). |
| ln_1m_exp |
Calculate log(1 - p) with p given in log space without loss of precision as described in http://cran.r-project.org/web/packages/Rmpfr/vignettes/log1mexp-note.pdf. |
| log_to_phred |
Convert log scale probability to PHRED scale. |
| phred_to_log |
Convert PHRED scale probability to log scale. |
| sub |
Subtract the given probabilities in a numerically stable way (Durbin 1998). |
| sum |
Calculate the sum of the given probabilities in a numerically stable way (Durbin 1998). |
Type Definitions
| ScanIter |
Iterator returned by scans over logprobs. |