beemorph 0.1.0

beemorph for global diversity
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use crate::interact::Interactive;
use crate::interact::InteractiveMap;
use std::error::Error;
use std::fs::File;
use std::io::{BufRead, BufReader};

/*
Gaurav Sablok
codeprog@icloud.com
*/

/*
Mapping coordinates
pub sourcetaxonid: 0,
pub sourcetaxontds: 1
pub sourcetaxonname: 2,
pub sourcetaxonpathnames: 3,
pub sourcetaxonpathids: 4,
pub sourcetaxonsubgenusid: 11,
pub sourcetaxongenusname: 12,
pub sourcetaxonfamilyid: 14,
pub sourcetaxonfamilyname: 13,
pub reststring: Vec<String>,

println!(
    "{}\t{}\t{}\t{}\t{}\t{}\t{}\t{}\t{}\n",
    linesplit[0],
    linesplit[1],
    linesplit[2],
    linesplit[4],
    linesplit[5],
    linesplit[10],
    linesplit[11],
    linesplit[14],
    linesplit[13]
);

*/

impl Interactive {
    pub fn intercative(&self) -> Result<Vec<InteractiveMap>, Box<dyn Error>> {
        let fileopen = self.interactive.clone();
        let filereadopen = File::open(fileopen).expect("file not present");
        let filread = BufReader::new(filereadopen);
        let mut pathdatabase: Vec<InteractiveMap> = Vec::new();
        for i in filread.lines() {
            let line = i.expect("file not present");
            let linesplit = line
                .split("\t")
                .map(|x| x.to_string())
                .filter(|x| x != "")
                .collect::<Vec<_>>();
            pathdatabase.push(InteractiveMap {
                sourcetaxonid: linesplit[0].clone(),
                sourcetaxontds: linesplit[1].clone(),
                sourcetaxonname: linesplit[2].clone(),
                sourcetaxonpathnames: linesplit[4].clone(),
                sourcetaxonpathids: linesplit[5].clone(),
                sourcetaxonsubgenusid: linesplit[10].clone(),
                sourcetaxongenusname: linesplit[11].clone(),
                sourcetaxonfamilyid: linesplit[14].clone(),
                sourcetaxonfamilyname: linesplit[13].clone(),
                reststring: linesplit.clone().concat(),
            })
        }
        Ok(pathdatabase)
    }
}