[−][src]Module conshomfold::utils

Structs

BA_SCORE_MAT
FastaRecord
HashMap	A hash map implemented with quadratic probing and SIMD lookup.
Options	A description of the options that a program can handle.
RIBOSUM_BA_SCORE_MAT
RIBOSUM_BPA_SCORE_MAT
SPECIAL_HL_DELTA_FES
SaScoringParams
SsFreeEnergyMats
SsPartFuncMats
SsProbMats

A
AA
AC
AG
AU
BIG_A
BIG_C
BIG_G
BIG_U
C
CA
CC
CG
COEFFICIENT_4_TERM_OF_NUM_OF_BRANCHING_HELICES_ON_INIT_ML_DELTA_FE
COEFFICIENT_4_NINIO
COEFFICIENT_4_LOG_EXTRAPOLATION_OF_INIT_HL_DELTA_FE
COEFFICIENT_4_ALL_C_HL_DELTA_FE
CONST_4_INIT_ML_DELTA_FE
CONST_4_ALL_C_HL_DELTA_FE
CU
FIVE_PRIME_DE_DELTA_FES
G
GA
GAS_CONST
GC
GG
GU
HELIX_AU_OR_GU_END_PENALTY_DELTA_FE
HELIX_INTERMOLECULAR_INIT_DELTA_FE
HELIX_SYMMETRY_PENALTY_DELTA_FE
HL_GG_FIRST_MISMATCH_BONUS_DELTA_FE
HL_OF_3_CS_PENALTY_DELTA_FE
HL_SPECIAL_GU_CLOSURE_BONUS_DELTA_FE
HL_TM_DELTA_FES
HL_UU_OR_GA_FIRST_MISMATCH_BONUS_DELTA_FE
IL_TM_DELTA_FES
INIT_BL_DELTA_FES
INIT_HL_DELTA_FES
INIT_IL_DELTA_FES
INIT_INSERT_SCORE
INIT_MATCH_SCORE
INSERT_2_MATCH_SCORE
INSERT_EXTEND_SCORE
INSERT_SCORES
INSERT_SWITCH_SCORE
INVERSE_TEMPERATURE
K0
KILO
MATCH_2_MATCH_SCORE
MATCH_2_INSERT_SCORE
MAX_2_LOOP_LEN
MAX_LOOP_LEN_4_LOG_EXTRAPOLATION_OF_INIT_LOOP_DELTA_FE
MAX_NINIO
MAX_SPAN_OF_INDEX_PAIR_CLOSING_IL
MIN_HL_LEN
MIN_LOOP_LEN_4_LOG_EXTRAPOLATION_OF_INIT_HL_DELTA_FE
MIN_SPAN_OF_INDEX_PAIR_CLOSING_HL
MIN_SPAN_OF_INDEX_PAIR_CLOSING_ML
ML_TM_DELTA_FES
NEG_INFINITY	Negative infinity (−∞). Use `f32::NEG_INFINITY` instead.
NUM_OF_BASES
NUM_OF_SPECIAL_HLS
NUM_OF_TRANSITS
ONE_VS_1_IL_DELTA_FES
ONE_VS_2_IL_DELTA_FES
ONE_VS_MANY_IL_TM_DELTA_FES
OTHER_IL_TM_BONUS_DELTA_FES
PSEUDO_BASE
SMALL_A
SMALL_C
SMALL_G
SMALL_U
STACK_DELTA_FES
TEMPERATURE
THREE_PRIME_DE_DELTA_FES
TWO_VS_2_IL_DELTA_FES
TWO_VS_3_IL_TM_BONUS_DELTA_FES
TWO_VS_3_IL_TM_DELTA_FES
U
UA
UC
UG
UU

convert
from_utf8_unchecked ^⚠	Converts a slice of bytes to a string slice without checking that the string contains valid UTF-8.
get_2_loop_fe
get_abs_diff
get_bpp_and_unpair_prob_mats
get_hl_fe
get_special_hl_fe
get_ss_part_func_mats
invert_bp
is_au_or_gu
is_canonical
is_rna_base
logsumexp
max	Compares and returns the maximum of two values.
mccaskill_algo
min	Compares and returns the minimum of two values.
multizip	An iterator that generalizes .zip() and allows running multiple iterators in lockstep.
print_program_usage
scale