Crate bustools_cli

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While this is mostly a CLI binary around bustools, some functionality might be useful as a library, in particular the count, count2 and butterfly modules.

Modules§

  • busmerger
    Filtering/Merging busfiles on CB/UMI overlap
  • butterfly
    butterfly provides quanification of amplification for a kallisto-bus scRNAseq experiment
  • correct
    Code for bustools correct to correct sequencing errors in Cell Barcodes using a whitelist
  • count
    Recreating bustools count to aggregate a busfile into a count-matrix
  • count2
    This turns a busfolder into a count matrix, slightly different strategy than crate::count. Not sure which is fsater
  • countmatrix
    A sparse countmatrix: cells vs genes
  • inspect
    Inspecting a busfile for statistics
  • sort
    bustools sort code. Sorts busfiles by CB/UMI/EC