List of all items
Structs
- bam::BinnedCov
- blobdir::AssemblyMeta
- blobdir::BuscoGene
- blobdir::Field
- blobdir::FieldMeta
- blobdir::Filter
- blobdir::Keys
- blobdir::Meta
- blobdir::PlotMeta
- blobdir::TaxonMeta
- cli::Arguments
- cli::DepthOptions
- cli::FilterOptions
- cli::IndexOptions
- cli::PlotOptions
- cli::TaxonomyOptions
- cli::ValidateOptions
- index::Analysis
- index::DatasetsSequenceReport
- index::Feature
- index::Features
- parse::EnaTaxon
- parse::genomehubs::BinsConfig
- parse::genomehubs::ConstraintConfig
- parse::genomehubs::ExclusionConfig
- parse::genomehubs::GHubsAnalysisConfig
- parse::genomehubs::GHubsConfig
- parse::genomehubs::GHubsDefaultsConfig
- parse::genomehubs::GHubsFieldConfig
- parse::genomehubs::GHubsFileConfig
- parse::genomehubs::Source
- parse::genomehubs::ValidationCounts
- parse::genomehubs::ValidationReport
- parse::genomehubs::ValueMetadataConfig
- parse::lookup::Candidate
- parse::lookup::MatchCounts
- parse::lookup::TaxonInfo
- parse::lookup::TaxonMatch
- parse::nodes::MergeException
- parse::nodes::Name
- parse::nodes::Node
- parse::nodes::Nodes
- plot::GridSize
- plot::axis::AxisOptions
- plot::axis::ChartAxes
- plot::axis::ScatterAxis
- plot::axis::TickOptions
- plot::blob::BlobData
- plot::blob::BlobDimensions
- plot::category::Category
- plot::chart::Chart
- plot::chart::Dimensions
- plot::chart::TopRightBottomLeft
- plot::component::LegendEntry
- plot::component::RadialTick
- plot::component::Tick
- plot::cumulative::CumulativeData
- plot::data::Bin
- plot::data::HistogramData
- plot::data::Line
- plot::data::LineData
- plot::data::ScatterData
- plot::data::ScatterPoint
- plot::snail::SnailStats
- plot::snail::SummaryStats
- taxonomy::api::ApiState
- taxonomy::api::LookupListRequest
- taxonomy::api::LookupResponse
- taxonomy::api::NodeResponse
- taxonomy::api::TaxonomyService
- taxonomy::api::ValidateRequest
- taxonomy::api::ValidateResponse
Enums
- blobdir::Datatype
- cli::Origin
- cli::Palette
- cli::RoundingStrategyWrapper
- cli::Shape
- cli::SubCommand
- cli::TaxonomyFormat
- cli::View
- error::Error
- parse::genomehubs::FieldScale
- parse::genomehubs::FieldStatus
- parse::genomehubs::FieldType
- parse::genomehubs::GHubsFileFormat
- parse::genomehubs::Organelle
- parse::genomehubs::PathBufOrVec
- parse::genomehubs::SkipPartial
- parse::genomehubs::StringOrVec
- parse::genomehubs::SummaryFunction
- parse::genomehubs::SummaryFunctionOrVec
- parse::genomehubs::TraverseDirection
- parse::genomehubs::UsizeOrVec
- parse::genomehubs::ValidationStatus
- parse::lookup::MatchStatus
- plot::ShowLegend
- plot::Suffix
- plot::axis::AxisName
- plot::axis::Position
- plot::axis::Scale
- plot::axis::TickStatus
- plot::component::LegendShape
- plot::data::Reducer
Functions
- bam::bed_from_bam
- bam::create_index
- bam::depth_from_bam
- bam::get_bed_file
- bam::get_depth
- bam::open_bam
- bam::reads_from_bam
- blobdir::apply_filter_busco
- blobdir::apply_filter_cat
- blobdir::apply_filter_cat_tuple
- blobdir::apply_filter_float
- blobdir::apply_filter_int
- blobdir::apply_filter_option_int
- blobdir::apply_filter_option_string_with_fallback
- blobdir::apply_filter_string
- blobdir::file_reader
- blobdir::filter_float_values
- blobdir::filter_int_values
- blobdir::filter_string_values
- blobdir::get_path
- blobdir::get_plot_values
- blobdir::get_window_values
- blobdir::local_file_reader
- blobdir::parse_blobdir
- blobdir::parse_field_busco
- blobdir::parse_field_cat
- blobdir::parse_field_cat_windows
- blobdir::parse_field_float
- blobdir::parse_field_float_windows
- blobdir::parse_field_identifiers
- blobdir::parse_field_int
- blobdir::parse_field_int_windows
- blobdir::parse_field_string
- blobdir::parse_field_synonym
- blobdir::parse_filters
- blobdir::set_filters
- cli::parse
- depth::depth
- fasta::subsample
- fastq::open_fastx
- fastq::subsample
- fastq::suffix_file_name
- filter::filter
- index::index
- io::append_to_path
- io::file_reader
- io::get_append_writer
- io::get_csv_reader
- io::get_csv_writer
- io::get_empty_reader
- io::get_file_writer
- io::get_list
- io::get_writer
- io::local_file_reader
- io::read_lines
- io::remote_file_reader
- io::ssh_file_reader
- io::write_list
- parse::genomehubs::string_to_u8_opt
- parse::lookup::build_fast_lookup
- parse::lookup::build_lineage_lookup
- parse::lookup::build_lookup
- parse::lookup::clean_name
- parse::lookup::lookup_nodes
- parse::lookup::lookup_nodes_by_id
- parse::lookup::match_taxonomy_section
- parse::parse_file
- plot::blob::axis_hist
- plot::blob::bin_axes
- plot::blob::bin_axis
- plot::blob::blob_points
- plot::blob::category_legend_full
- plot::blob::legend
- plot::blob::plot
- plot::blob::plot_grid
- plot::category::set_cat_order
- plot::color_to_hex
- plot::component::arc_path
- plot::component::chart_axis
- plot::component::create_axis_ticks
- plot::component::create_tick
- plot::component::font_family
- plot::component::legend_group
- plot::component::path_axis_major
- plot::component::path_axis_minor
- plot::component::path_gridline_major
- plot::component::path_gridline_minor
- plot::component::polar_to_path
- plot::component::polar_to_path_bounded
- plot::component::set_axis_ticks
- plot::component::set_axis_ticks_circular
- plot::component::set_tick
- plot::component::set_tick_circular
- plot::cumulative::cumulative_lines
- plot::cumulative::plot
- plot::default_palette
- plot::plot
- plot::plot_blob
- plot::plot_cumulative
- plot::plot_grid
- plot::plot_legend
- plot::plot_snail
- plot::reverse_palette
- plot::save_png
- plot::save_svg
- plot::set_palette
- plot::snail::busco_stats_legend
- plot::snail::composition_stats_legend
- plot::snail::dataset_name_legend
- plot::snail::scaffold_stats_legend
- plot::snail::scale_stats_legend
- plot::snail::snail_stats
- plot::snail::svg
- plot::style::path_filled
- plot::style::path_open
- plot::style::path_partial
- taxonomy::api::run_api_server
- taxonomy::taxdump_to_nodes
- taxonomy::taxonomy
- utils::compact_float::deserialize
- utils::compact_float::serialize
- utils::format_pct
- utils::format_si
- utils::indexed_sort
- utils::linear_scale
- utils::linear_scale_float
- utils::log_scale
- utils::log_scale_float
- utils::max_float
- utils::min_float
- utils::scale_float
- utils::scale_floats
- utils::sqrt_scale
- utils::sqrt_scale_float
- utils::styled_progress_bar
- validate::validate
