List of all items
Structs
- alignment::aligner::SequenceAligner
- ds::algo::dfs::Dfs
- ds::builders::debruijn::DeBruijnBuilder
- ds::builders::suffix_tree::SuffixTreeBuilder
- ds::builders::suffix_tree::SuffixTreeEdge
- ds::builders::suffix_tree::SuffixTreeNode
- ds::builders::trie::Trie
- ds::builders::trie::TrieNode
- ds::graph::Edge
- ds::graph::Graph
- ds::graph::GraphProperties
- ds::graph::Node
- ds::sequence::Sequence
- ds::tile::Tile
- io::fasta::Reader
- io::fasta::Record
- io::fasta::Records
- io::fasta::Writer
Enums
Traits
Functions
- alignment::score::blosum62
- alignment::score::pam250
- alignment::score::unit
- analysis::seq::count_nucleotides
- analysis::seq::edit_distance
- analysis::seq::gc_content
- analysis::seq::hamming_distance
- analysis::seq::linguistic_complexity
- analysis::seq::transition_transversion_ratio
- analysis::spectro::complete_spectrum
- analysis::spectro::infer_protein
- analysis::spectro::match_protein
- analysis::spectro::prefix_spectrum
- analysis::spectro::spectral_mass_shift
- analysis::spectro::suffix_spectrum
- analysis::spectro::weighted_mass
- analysis::stat::calc_consensus
- analysis::stat::calc_profile
- analysis::stat::expected_restriction_sites
- analysis::stat::n_statistic
- analysis::stat::p_distance_matrix
- analysis::stat::permutations
- analysis::stat::random_motifs
- analysis::stat::random_substrings
- analysis::stat::signed_permutations
- ds::algo::cycles::cycles
- ds::algo::cycles::eulerian_circuit
- ds::algo::misc::connected_components
- ds::algo::misc::overlap_graph
- processing::patterns::find_motif
- processing::patterns::longest_common_subsequence
- processing::patterns::longest_common_substring
- processing::patterns::longest_increasing_subsequence
- processing::patterns::reverse_complement_substrings
- processing::patterns::shortest_common_supersequence
- processing::patterns::subsequences
- processing::transformers::complement_dna
- processing::transformers::correct_read_errors
- processing::transformers::generate_k_mers
- processing::transformers::k_mer_composition
- processing::transformers::open_reading_frames
- processing::transformers::sort_lexicographically
- processing::transformers::splice_introns
- processing::transformers::transcribe_dna
- processing::transformers::translate_rna