List of all items
Structs
- _wavefront_aligner_t
- affine2p_penalties_t
- affine_penalties_t
- alignment_form_t
- alignment_system_t
- bt_block_t
- cigar_t
- heatmap_t
- linear_penalties_t
- mm_allocator_t
- profiler_counter_t
- profiler_timer_t
- vector_t
- wavefront_align_status_t
- wavefront_aligner_attr_t
- wavefront_bialigner_t
- wavefront_components_t
- wavefront_heuristic_t
- wavefront_penalties_t
- wavefront_plot_attr_t
- wavefront_plot_t
- wavefront_pos_t
- wavefront_sequences_t
- wavefront_slab_t
- wavefront_t
- wf_backtrace_buffer_t
Functions
- wavefront_align
- wavefront_align_lambda
- wavefront_align_packed2bits
- wavefront_align_strerror
- wavefront_align_strerror_short
- wavefront_aligner_delete
- wavefront_aligner_get_size
- wavefront_aligner_init
- wavefront_aligner_maxtrim_cigar
- wavefront_aligner_new
- wavefront_aligner_print
- wavefront_aligner_print_conf
- wavefront_aligner_print_mode
- wavefront_aligner_print_scope
- wavefront_aligner_reap
- wavefront_aligner_set_alignment_end_to_end
- wavefront_aligner_set_alignment_extension
- wavefront_aligner_set_alignment_free_ends
- wavefront_aligner_set_heuristic_banded_adaptive
- wavefront_aligner_set_heuristic_banded_static
- wavefront_aligner_set_heuristic_none
- wavefront_aligner_set_heuristic_wfadaptive
- wavefront_aligner_set_heuristic_wfmash
- wavefront_aligner_set_heuristic_xdrop
- wavefront_aligner_set_heuristic_zdrop
- wavefront_aligner_set_max_alignment_steps
- wavefront_aligner_set_max_memory
- wavefront_aligner_set_max_num_threads
- wavefront_aligner_set_min_offsets_per_thread
- wavefront_allocate
- wavefront_bialigner_delete
- wavefront_bialigner_get_size
- wavefront_bialigner_new
- wavefront_bialigner_reap
- wavefront_bialigner_set_heuristic
- wavefront_bialigner_set_max_alignment_steps
- wavefront_bialigner_set_max_memory
- wavefront_bialigner_set_max_num_threads
- wavefront_bialigner_set_min_offsets_per_thread
- wavefront_bialigner_set_sequences_ascii
- wavefront_bialigner_set_sequences_bounds
- wavefront_bialigner_set_sequences_lambda
- wavefront_bialigner_set_sequences_packed2bits
- wavefront_components_allocate
- wavefront_components_clear
- wavefront_components_compact_bt_buffer
- wavefront_components_free
- wavefront_components_reap
- wavefront_components_resize
- wavefront_components_resize_null__victim
- wavefront_free
- wavefront_get_size
- wavefront_heuristic_clear
- wavefront_heuristic_cufoff
- wavefront_heuristic_print
- wavefront_heuristic_set_banded_adaptive
- wavefront_heuristic_set_banded_static
- wavefront_heuristic_set_none
- wavefront_heuristic_set_wfadaptive
- wavefront_heuristic_set_wfmash
- wavefront_heuristic_set_xdrop
- wavefront_heuristic_set_zdrop
- wavefront_init
- wavefront_init_null
- wavefront_init_victim
- wavefront_penalties_print
- wavefront_penalties_set_affine
- wavefront_penalties_set_affine2p
- wavefront_penalties_set_edit
- wavefront_penalties_set_indel
- wavefront_penalties_set_linear
- wavefront_plot
- wavefront_plot_delete
- wavefront_plot_new
- wavefront_plot_print
- wavefront_plot_resize
- wavefront_resize
- wavefront_sequences_allocate
- wavefront_sequences_cmp
- wavefront_sequences_free
- wavefront_sequences_get_pattern
- wavefront_sequences_get_text
- wavefront_sequences_init_ascii
- wavefront_sequences_init_lambda
- wavefront_sequences_init_packed2bits
- wavefront_sequences_set_bounds
- wavefront_set_limits
- wavefront_slab_allocate
- wavefront_slab_clear
- wavefront_slab_delete
- wavefront_slab_free
- wavefront_slab_get_size
- wavefront_slab_new
- wavefront_slab_reap
- wavefront_slab_set_mode
Type Aliases
- FILE
- __off64_t
- __off_t
- __syscall_slong_t
- __time_t
- affine2p_matrix_type
- alignment_match_funct_t
- alignment_scope_t
- alignment_span_t
- bt_block_idx_t
- distance_metric_t
- heatmap_type
- pcigar_t
- timespec
- wavefront_align_mode_t
- wavefront_aligner_t
- wavefront_memory_t
- wavefront_status_type
- wf_heuristic_strategy
- wf_offset_t
- wf_sequences_mode_t
- wf_slab_mode_t
Statics
Constants
- affine2p_matrix_type_affine2p_matrix_D1
- affine2p_matrix_type_affine2p_matrix_D2
- affine2p_matrix_type_affine2p_matrix_I1
- affine2p_matrix_type_affine2p_matrix_I2
- affine2p_matrix_type_affine2p_matrix_M
- alignment_scope_t_compute_alignment
- alignment_scope_t_compute_score
- alignment_span_t_alignment_end2end
- alignment_span_t_alignment_endsfree
- distance_metric_t_edit
- distance_metric_t_gap_affine
- distance_metric_t_gap_affine_2p
- distance_metric_t_gap_linear
- distance_metric_t_indel
- heatmap_type_heatmap_max
- heatmap_type_heatmap_min
- heatmap_type_heatmap_value
- wavefront_align_mode_t_wf_align_biwfa
- wavefront_align_mode_t_wf_align_biwfa_breakpoint_forward
- wavefront_align_mode_t_wf_align_biwfa_breakpoint_reverse
- wavefront_align_mode_t_wf_align_biwfa_subsidiary
- wavefront_align_mode_t_wf_align_regular
- wavefront_memory_t_wavefront_memory_high
- wavefront_memory_t_wavefront_memory_low
- wavefront_memory_t_wavefront_memory_med
- wavefront_memory_t_wavefront_memory_ultralow
- wavefront_status_type_wavefront_status_busy
- wavefront_status_type_wavefront_status_deallocated
- wavefront_status_type_wavefront_status_free
- wf_heuristic_strategy_wf_heuristic_banded_adaptive
- wf_heuristic_strategy_wf_heuristic_banded_static
- wf_heuristic_strategy_wf_heuristic_none
- wf_heuristic_strategy_wf_heuristic_wfadaptive
- wf_heuristic_strategy_wf_heuristic_wfmash
- wf_heuristic_strategy_wf_heuristic_xdrop
- wf_heuristic_strategy_wf_heuristic_zdrop
- wf_sequences_mode_t_wf_sequences_ascii
- wf_sequences_mode_t_wf_sequences_lambda
- wf_sequences_mode_t_wf_sequences_packed2bits
- wf_slab_mode_t_wf_slab_reuse
- wf_slab_mode_t_wf_slab_tight