List of all items

Structs

• AtomGeneric
• BackboneSS
• BondGeneric
• ChainGeneric
• PharmacophoreFeatureGeneric
• ResidueGeneric
• ab1::SeqRecordAb1
• amber_typedef::AmberDef
• amber_typedef::AtomTypeDef
• amber_typedef::WildAtom
• cif_sf::CifStructureFactors
• cif_sf::MillerIndices
• dcd::DcdFrame
• dcd::DcdMetadata
• dcd::DcdTrajectory
• dcd::DcdUnitCell
• gromacs::GromacsInput
• gromacs::MoleculeInput
• gromacs::gro::AtomGro
• gromacs::gro::Gro
• gromacs::mdp::BarostatCfg
• gromacs::mdp::MdpParams
• gromacs::mdp::OutputControl
• gromacs::mdp::PmeConfig
• gromacs::output::GromacsFrame
• gromacs::output::GromacsOutput
• gromacs::output::OutputEnergy
• gromacs::solvate::CustomSolventTemplate
• gromacs::solvate::WaterInitTemplate
• gromacs::topology::MoleculeTopology
• gromacs::trr::TrrMetadata
• map::DensityHeaderInner
• map::DensityMap
• map::MapHeader
• map::UnitCell
• md_params::AngleBendingParams
• md_params::BondStretchingParams
• md_params::ChargeParams
• md_params::ChargeParamsProtein
• md_params::DihedralParams
• md_params::ForceFieldParams
• md_params::ForceFieldParamsIndexed
• md_params::ForceFieldParamsVec
• md_params::LjParams
• md_params::MassParams
• md_params::NucleotideTemplate
• mmcif::MmCif
• mol2::Mol2
• mol_templates::TemplateData
• mol_templates::UnitConnect
• orca::BondLocalization
• orca::GeometryOutput
• orca::OrcaInput
• orca::Symmetry
• orca::charges::AtomChargeData
• orca::charges::ChargesOutput
• orca::charges::MbisChargesCfg
• orca::charges::Octopole
• orca::charges::Quadrupole
• orca::dynamics::Dynamics
• orca::dynamics::DynamicsOutput
• orca::geom::Geom
• orca::method::MethodSection
• orca::scf::Scf
• orca::solvation::Solvator
• orca::solvation::SolvatorImplicit
• pdbqt::Pdbqt
• sdf::Sdf
• xtc::XtcMetadata
• xyz::Xyz

Enums

• BondType
• ExperimentalMethod
• FrameSlice
• LipidStandard
• PharmacophoreTypeGeneric
• ResidueEnd
• ResidueType
• SecondaryStructure
• gromacs::mdp::Barostat
• gromacs::mdp::ConstraintAlgorithm
• gromacs::mdp::Constraints
• gromacs::mdp::CoulombType
• gromacs::mdp::FreeEnergyCalculations
• gromacs::mdp::Integrator
• gromacs::mdp::Pbc
• gromacs::mdp::PressureCouplingType
• gromacs::mdp::Thermostat
• gromacs::mdp::VdwModifier
• gromacs::mdp::VdwType
• gromacs::solvate::Solvent
• mol2::ChargeType
• mol2::MolType
• orca::GcpOption
• orca::GeomOptThresh
• orca::Keyword
• orca::LocalizationMethod
• orca::OrcaOutput
• orca::Task
• orca::TerminationStatus
• orca::basis_sets::BasisSet
• orca::basis_sets::BasisSetCategory
• orca::dynamics::Thermostat
• orca::geom::Convergence
• orca::method::Correlation
• orca::method::DispersionCorrection
• orca::method::FrozenCore
• orca::method::Method
• orca::scf::ScfConvergenceTolerance
• orca::scf::ScfGuess
• orca::scf::ScfGuessMode
• orca::scf::ScfMode
• orca::scf::WaveFunctionType
• orca::solvation::ImplicitSolvationModel
• orca::solvation::ImplicitSolvationSurfaceType
• orca::solvation::SolvatorClusterMode
• orca::solvation::Solvent
• sdf::SdfFormat

Traits

• md_params::AtomFfSource

Functions

• ab1::import_ab1
• bond_inference::create_bonds
• dcd::read_dcd
• dcd::write_dcd
• gromacs::gro::make_gro
• gromacs::gro::make_gro_with_origin
• gromacs::output::parse_gro_traj
• gromacs::run_gmx
• gromacs::run_gmx_stdin
• gromacs::topology::atomic_number_from_mass
• gromacs::topology::make_top
• gromacs::trr::read_trr
• gromacs::trr::write_trr
• map::density_from_2fo_fc_rcsb_gemmi
• md_params::load_amino_charges
• md_params::parse_lib
• md_params::parse_lib_lipid
• md_params::parse_lib_nucleic_acid
• md_params::parse_lib_peptide
• mol_templates::load_templates
• prmtop::load_prmtop
• prmtop::save_prmtop
• xtc::read_xtc
• xtc::write_xtc
• xyz::load_xyz_trajectory
• xyz::new_xyz_trajectory
• xyz::save_xyz_trajectory

Type Aliases

• mol_templates::ResidueConnectRow