Module bio::alphabets

Implementation of alphabets and useful utilities.

Example

use bio::alphabets;
let alphabet = alphabets::dna::alphabet();
assert!(alphabet.is_word(b"AACCTgga"));
assert!(!alphabet.is_word(b"AXYZ"));

Modules

• dna
  Implementation of the DNA alphabet.
• protein
  Implementation of the protein alphabet.
• rna
  Implementation of the RNA alphabet.

Structs

• Alphabet
  Representation of an alphabet.
• QGrams
  Iterator over q-grams.
• RankTransform
  Tools based on transforming the alphabet symbols to their lexicographical ranks.

Functions

• english_ascii_lower_alphabet
  Returns the english ascii lower case alphabet.
• english_ascii_upper_alphabet
  Returns the english ascii upper case alphabet.

Type Aliases

• SymbolRanks