Trait bio::stats::pairhmm::HopParameters

pub trait HopParameters {
    fn prob_hop_x(&self) -> LogProb;
    fn prob_hop_y(&self) -> LogProb;
    fn prob_hop_x_extend(&self) -> LogProb;
    fn prob_hop_y_extend(&self) -> LogProb;
}

Trait for parametrization of PairHMM hop behavior.

Required methods

fn prob_hop_x(&self) -> LogProb

Probability to start hop in x.

fn prob_hop_y(&self) -> LogProb

Probability to start hop in y.

fn prob_hop_x_extend(&self) -> LogProb

Probability to extend hop in x.

fn prob_hop_y_extend(&self) -> LogProb

Probability to extend hop in y.

Implementors