Module bio::stats

Mathematical and statistical tools.

Re-exports

pub use crate::stats::probs::LogProb;

pub use crate::stats::probs::PHREDProb;

pub use crate::stats::probs::Prob;

Modules

bayesian	Utilities for Bayesian statistics.
combinatorics	Combinations with and without replacement.
hmm	An implementation of Hidden Markov Models in Rust.
pairhmm	This module contains the implementation of a classic PairHMM as described in Durbin, R., Eddy, S., Krogh, A., & Mitchison, G. (1998). Biological Sequence Analysis. Current Topics in Genome Analysis 2008. http://doi.org/10.1017/CBO9780511790492. It also contains a modified variant HomopolyPairHMM with additional homopolymer states suited for dealing with homopolymer runs in sequencing as often encountered in Oxford Nanopore sequencing data.
probs	Handling log-probabilities. Log probabilities are an important tool to deal with probabilities in a numerically stable way, in particular when having probabilities close to zero.