Trait bio::stats::pairhmm::GapParameters

pub trait GapParameters {
    fn prob_gap_x(&self) -> LogProb;
    fn prob_gap_y(&self) -> LogProb;
    fn prob_gap_x_extend(&self) -> LogProb;
    fn prob_gap_y_extend(&self) -> LogProb;
}

Trait for parametrization of PairHMM gap behavior.

Required Methods

fn prob_gap_x(&self) -> LogProb

Probability to open gap in x.

fn prob_gap_y(&self) -> LogProb

Probability to open gap in y.

fn prob_gap_x_extend(&self) -> LogProb

Probability to extend gap in x.

fn prob_gap_y_extend(&self) -> LogProb

Probability to extend gap in y.

Implementors