Module bio::stats

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Expand description

Mathematical and statistical tools.

Re-exports

pub use stats::probs::LogProb;
pub use stats::probs::PHREDProb;
pub use stats::probs::Prob;

Modules

Utilities for Bayesian statistics.
Combinations with and without replacement.
An implementation of Hidden Markov Models in Rust.
A pair Hidden Markov Model for calculating the probability that two sequences are related to each other. Depending on the used parameters, this can, e.g., be used to calculate the probability that a certain sequencing read comes from a given position in a reference genome.
Handling log-probabilities. Log probabilities are an important tool to deal with probabilities in a numerically stable way, in particular when having probabilities close to zero.