Module bio::alignment
[−]
[src]
Various alignment and distance computing algorithms.
Modules
distance |
Various subroutines for computing a distance between sequences. |
pairwise |
Calculate alignments with a generalized variant of the Smith Waterman algorithm. Complexity: O(n * m) for strings of length m and n. |
Structs
Alignment |
An alignment, consisting of a score, the start and end position of the alignment on
sequence x and sequence y, the length of sequence x,
and the alignment edit operations (see |
Enums
AlignmentOperation |
Alignment operations (Match, Subst, Del and Ins). |