List of all items
Structs
- bigsi::BigsyMap
- bigsi::BigsyMapMini
- bigsi::BigsyMapMiniNew
- bigsi::BigsyMapNew
- read_id_mt_pe::SeqRead
- read_id_mt_pe::SeqReadstr
- seq::Fasta
- seq::Fastq
- simple_bloom::BloomFilter
Functions
- batch_search_pe::batch_search
- bigsi::read_bigsi
- bigsi::read_bigsi_highmem
- bigsi::read_bigsi_mini
- bigsi::read_bigsi_mini_highmem
- bigsi::save_bigsi
- bigsi::save_bigsi_mini
- build::build_multi
- build::build_multi_mini
- build::build_single
- build::build_single_mini
- build::tab_to_map
- kmer::auto_cutoff
- kmer::clean_map
- kmer::find_minimizer
- kmer::kmerize_string
- kmer::kmerize_vector
- kmer::kmerize_vector_set
- kmer::kmerize_vector_skip_n
- kmer::kmerize_vector_skip_n_set
- kmer::kmerize_vector_skip_n_set_str
- kmer::kmerize_vector_uppercase
- kmer::kmers_fq_pe
- kmer::kmers_fq_pe_minimizer
- kmer::kmers_fq_pe_minimizer_qual
- kmer::kmers_fq_pe_qual
- kmer::kmers_from_fq
- kmer::kmers_from_fq_minimizer
- kmer::kmers_from_fq_minimizer_qual
- kmer::kmers_from_fq_qual
- kmer::minimerize_vector
- kmer::minimerize_vector_skip_n
- kmer::minimerize_vector_skip_n_set
- kmer::minimerize_vector_skip_n_set_str
- kmer::read_fasta
- kmer::read_fasta_mf
- kmer::revcomp
- perfect_search::batch_search
- perfect_search::batch_search_mf
- read_filter::read_filter_pe
- read_filter::read_filter_se
- read_filter::tab_to_map
- read_id_batch::read_id_batch
- read_id_mt_pe::bitwise_and
- read_id_mt_pe::false_prob
- read_id_mt_pe::false_prob_map
- read_id_mt_pe::kmer_poll_plus
- read_id_mt_pe::not_fp_signicant
- read_id_mt_pe::parallel_vec
- read_id_mt_pe::parallel_vec_str
- read_id_mt_pe::per_read_stream_pe
- read_id_mt_pe::per_read_stream_se
- read_id_mt_pe::search_index
- read_id_mt_pe::search_index_classic
- read_id_mt_pe::stream_fasta
- read_id_mt_pe::vec_strings_to_string
- reports::generate_report
- reports::generate_report_gene
- reports::mode
- reports::read_counts
- reports::read_counts_five_fields
- seq::has_no_n
- seq::is_good_base
- seq::qual_mask