Module bdb::db::mass_spectra::low_level

Re-exports for low-level, efficient APIs.

In order for high-performance processing of large documents, We must use parsers that lazily read and write items to and from documents. The writers accept both by-value and by-reference iterators, allowing you to easily chain lazy readers and writers to convert between export formats.

The memory footprint of these lazy low-level functions is minimal, typically < 16 KB required for internal buffers, and < 1 KB for each individual item.

Structs

FullMsMgfRtRegex

Regular expression to validate and parse Pava FullMs MGF RT lines.

FullMsMgfScanRegex

Regular expression to validate and parse Pava FullMs MGF scan lines.

MgfIter

Iterator to parse individual MGF entries from a document.

MgfRecordIter

Iterator to lazily load Records from a document.

MsConvertMgfChargeRegex

Regular expression to validate and parse MSConvert MGF charge lines.

MsConvertMgfPepMassRegex

Regular expression to validate and parse MSConvert MGF pepmass lines.

MsConvertMgfRtRegex

Regular expression to validate and parse MSConvert MGF RT lines.

MsConvertMgfTitleRegex

Regular expression to validate and parse MSConvert MGF title lines.

PavaMgfChargeRegex

Regular expression to validate and parse Pava MGF charge lines.

PavaMgfPepMassRegex

Regular expression to validate and parse Pava MGF pepmass lines.

PavaMgfTitleRegex

Regular expression to validate and parse Pava MGF title lines.

PwizMgfChargeRegex

Regular expression to validate and parse Pwiz MGF charge lines.

PwizMgfPepMassRegex

Regular expression to validate and parse Pwiz MGF pepmass lines.

PwizMgfRtRegex

Regular expression to validate and parse Pwiz MGF RT lines.

PwizMgfTitleRegex

Regular expression to validate and parse Pwiz MGF title lines.

Traits

ExtractionRegex

Provides a regular expression to extract data from input.

ValidationRegex

Provides a regular expression to validate input.

Functions

iterator_from_mgf

Create default record iterator from reader.

iterator_from_mgf_lenient

Create default record iterator from reader.

iterator_from_mgf_strict

Create default record iterator from reader.

record_from_mgf

Import record from MGF.

record_to_mgf

Export record to MGF.

reference_iterator_to_mgf

Default exporter from a non-owning iterator to MGF.

reference_iterator_to_mgf_lenient

Lenient exporter from a non-owning iterator to MGF.

reference_iterator_to_mgf_strict

Strict exporter from a non-owning iterator to MGF.

value_iterator_to_mgf

Default exporter from an owning iterator to MGF.

value_iterator_to_mgf_lenient

Lenient exporter from an owning iterator to MGF.

value_iterator_to_mgf_strict

Strict exporter from an owning iterator to MGF.

Type Definitions

MgfRecordLenientIter

Iterator to lazily load Records from a document.

MgfRecordStrictIter

Iterator to lazily load Records from a document.