[−][src]Module bam::index

BAI index, virtual offset and bgzip chunks.

Structs

Chunk	Chunk `[start-end)`, where `start` and `end` are virtual offsets.
Index	BAI Index. Allows to get chunks in a bgzip file, that contain records from a specific genomic region.
VirtualOffset	Virtual offset. Represents `block_offset << 16 \| contents_offset`, where `block_offset` is `u48` and represents the offset in the bgzip file to the beginning of th block (also known as `coffset` or `compressed_offset`).

Maximal possible bin value

bin_to_region	Returns a maximal region for a given bin
region_to_bin	Returns a BAI bin for the record with alignment `[beg-end)`.
region_to_bins	Returns all possible BAI bins for the region `[beg-end)`.