List of all items

Structs

• bed::BedLine
• bed::Writer
• fasta::FastaReader
• fasta::Writer
• genepred::Writer
• genepredext::Reader
• genepredext::Writer
• gtf::GtfRecord
• gtf::GtfRecordBuilder
• gtf::Reader
• gtf::Writer
• models::Codon
• models::Exon
• models::GeneticCode
• models::Sequence
• models::Transcript
• models::TranscriptBuilder
• models::Transcripts
• qc::QcCheck
• qc::Writer
• refgene::Reader
• refgene::Writer
• spliceai::Writer
• utils::errors::AtgError
• utils::errors::BuildCodonError
• utils::errors::BuildTranscriptError
• utils::errors::FastaError
• utils::errors::MissingCDSError
• utils::errors::ParseBedError
• utils::errors::ParseGtfError
• utils::errors::ParseRefGeneError
• utils::errors::ReadWriteError

Enums

• gtf::GtfFeature
• models::AminoAcid
• models::CdsStat
• models::Frame
• models::Nucleotide
• models::Strand
• qc::QcResult
• utils::GenomicRelation

Traits

• models::TranscriptRead
• models::TranscriptWrite

Functions

• qc::contains_exon
• qc::correct_cds_length
• qc::correct_start_codon
• qc::correct_stop_codon
• qc::no_start_codon
• qc::no_upstream_start_codon
• qc::no_upstream_stop_codon
• read_transcripts
• tests::transcripts::mito_transcript
• tests::transcripts::nm_001365057
• tests::transcripts::nm_001365408
• tests::transcripts::nm_001371720
• tests::transcripts::nm_201550
• tests::transcripts::standard_transcript
• utils::exon_cds_overlap
• utils::intersect
• utils::merge
• utils::relation
• utils::subtract
• utils::union

Type Aliases

• models::Coordinate
• models::CoordinateVector

Constants

• VERSION